Sequence analysis of the spike gene of Porcine epidemic diarrhea virus isolated from South China during 2011–2015
Identifieur interne : 000752 ( Main/Exploration ); précédent : 000751; suivant : 000753Sequence analysis of the spike gene of Porcine epidemic diarrhea virus isolated from South China during 2011–2015
Auteurs : Xiaoya Zhao [République populaire de Chine] ; Zhili Li [République populaire de Chine] ; Xiduo Zeng [République populaire de Chine] ; Guanqun Zhang [République populaire de Chine] ; Jianqiang Niu [République populaire de Chine] ; Baoli Sun [République populaire de Chine] ; Jingyun Ma [République populaire de Chine]Source :
- Journal of Veterinary Science [ 1229-845X ] ; 2017.
Abstract
The spike gene of porcine epidemic diarrhea virus (PEDV) was sequenced from 55 South China field strains isolated from pigs with symptoms of diarrhea. The sequences were compared within the set of field strains as well as with reference strains available in GenBank. Within the 55 South China PEDV field strains, the deduced amino acid sequence identities ranged from 93.8% to 99.9 % and ranged from 90.7% to 99.5% when compared with the foreign reference strains in GenBank. Our phylogenetic analysis showed that 10 of the 55 South China PEDV strains belonged to G1b and 45 belonged to G2b.
Url:
DOI: 10.4142/jvs.2017.18.2.237
PubMed: 27515262
PubMed Central: 5489471
Affiliations:
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Le document en format XML
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China during 2011–2015</title><author><name sortKey="Zhao, Xiaoya" sort="Zhao, Xiaoya" uniqKey="Zhao X" first="Xiaoya" last="Zhao">Xiaoya Zhao</name><affiliation wicri:level="1"><nlm:aff id="A1">College of Animal Science, South China Agricultural University, Guangzhou 510642, China.</nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>College of Animal Science, South China Agricultural University, Guangzhou 510642</wicri:regionArea><placeName><settlement type="city">Jiangmen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Li, Zhili" sort="Li, Zhili" uniqKey="Li Z" first="Zhili" last="Li">Zhili Li</name><affiliation wicri:level="1"><nlm:aff id="A2">Henan University of Science and Technology, Luoyang 471900, China.</nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>Henan University of Science and Technology, 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wicri:level="1"><nlm:aff id="A1">College of Animal Science, South China Agricultural University, Guangzhou 510642, China.</nlm:aff><country xml:lang="fr" wicri:curation="lc">République populaire de Chine</country><wicri:regionArea>College of Animal Science, South China Agricultural University, Guangzhou 510642</wicri:regionArea><placeName><settlement type="city">Jiangmen</settlement><region type="province">Guangdong</region></placeName></affiliation></author></analytic><series><title level="j">Journal of Veterinary Science</title><idno type="ISSN">1229-845X</idno><idno type="eISSN">1976-555X</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The spike gene of porcine epidemic diarrhea virus (PEDV) was sequenced from 55 South China field strains isolated from pigs with symptoms of diarrhea. The sequences were compared within the set of field strains as well as with reference strains available in GenBank. Within the 55 South China PEDV field strains, the deduced amino acid sequence identities ranged from 93.8% to 99.9 % and ranged from 90.7% to 99.5% when compared with the foreign reference strains in GenBank. Our phylogenetic analysis showed that 10 of the 55 South China PEDV strains belonged to G1b and 45 belonged to G2b.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Chang, Sh" uniqKey="Chang S">SH Chang</name></author><author><name sortKey="Bae, Jl" uniqKey="Bae J">JL Bae</name></author><author><name sortKey="Kang, Tj" uniqKey="Kang T">TJ Kang</name></author><author><name sortKey="Kim, J" uniqKey="Kim J">J Kim</name></author><author><name sortKey="Chung, Gh" uniqKey="Chung G">GH Chung</name></author><author><name sortKey="Lim, Cw" uniqKey="Lim C">CW Lim</name></author><author><name sortKey="Laude, H" uniqKey="Laude H">H Laude</name></author><author><name sortKey="Yang, Ms" uniqKey="Yang M">MS Yang</name></author><author><name sortKey="Jang, Ys" uniqKey="Jang Y">YS Jang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chen, F" uniqKey="Chen F">F Chen</name></author><author><name sortKey="Pan, Y" 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uniqKey="Zhao X" first="Xiaoya" last="Zhao">Xiaoya Zhao</name></region><name sortKey="Li, Zhili" sort="Li, Zhili" uniqKey="Li Z" first="Zhili" last="Li">Zhili Li</name><name sortKey="Ma, Jingyun" sort="Ma, Jingyun" uniqKey="Ma J" first="Jingyun" last="Ma">Jingyun Ma</name><name sortKey="Niu, Jianqiang" sort="Niu, Jianqiang" uniqKey="Niu J" first="Jianqiang" last="Niu">Jianqiang Niu</name><name sortKey="Niu, Jianqiang" sort="Niu, Jianqiang" uniqKey="Niu J" first="Jianqiang" last="Niu">Jianqiang Niu</name><name sortKey="Sun, Baoli" sort="Sun, Baoli" uniqKey="Sun B" first="Baoli" last="Sun">Baoli Sun</name><name sortKey="Zeng, Xiduo" sort="Zeng, Xiduo" uniqKey="Zeng X" first="Xiduo" last="Zeng">Xiduo Zeng</name><name sortKey="Zhang, Guanqun" sort="Zhang, Guanqun" uniqKey="Zhang G" first="Guanqun" last="Zhang">Guanqun Zhang</name><name sortKey="Zhang, Guanqun" sort="Zhang, Guanqun" uniqKey="Zhang G" first="Guanqun" last="Zhang">Guanqun 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